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BaseInfo

ncRNA ID novel_vvi_miR705
Species Vitis vinifera
Class miRNA
Genome position Chr1:9200651-9200740 [+]
Reference genome 12X
Source SRR1528358
Length 22
Mature sequence(if miRNA) 1 - AGUAUCUUAUAUUUUUUUGGAG - 22
Stem-loop(if miRNA) --    UCUU            AG   ---GAG UG CAAAGGCUGUU
  AGUA    AUAUUUUUUUGG  GAU      U  A           G
  ||||    ||||||||||||  |||      |  |
  UCAU    UAUAGGAAAACC  UUG      C  U           A
UU    -UCC            GG   UGUACA -- AGAAAGGAAGG
Stem-loop sequence AGUAUCUUAUAUUUUUUUGGAGGAUGAGUUGACAAAGGCUGUUGAGGAAGGAAAGAUCACAUGUGUUGGCCAAAAGGAUAUCCUUACUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA150630.1
ncRNA:22   GAGGUUUUUUUAUAUU-CUAUGA   1
  =|||||||||||||||-||||||
targets:69   UUCCAAAAAAAUAUAAUGAUACU   91

3.0 TSA: Vitis vinifera Locus_11848_Transcript_1/4_Confidence_0.667.Vivi mRNA sequence NA coding protein psRNATarget
KA150631.1
ncRNA:22   GAGGUUUUUUUAUAUU-CUAUGA   1
  =|||||||||||||||-||||||
targets:69   UUCCAAAAAAAUAUAAUGAUACU   91

3.0 TSA: Vitis vinifera Locus_11848_Transcript_3/4_Confidence_0.667.Vivi mRNA sequence NA coding protein psRNATarget