A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_vvi_miR697
Species	Vitis vinifera
Class	miRNA
Genome position	Chr3:12859343-12859540 [+]
Reference genome	12X
Source	SRR1048204
Length	24
Mature sequence(if miRNA)	1 - AGCAUUCCUCACAUUCUUCGUACC - 24
Stem-loop(if miRNA)	--AGCAU C G G U G A - ---G CC A U A CACCUCCUA -GU A UCCUCACAUU UUCGUACCCUU U AAUUU UUA U UUUUUGGA UUU GAUUUUU GGA AUCAU UC C UGU AAUG A \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\| \| \|\|\| \|\|\|\| AGGAGUGUAA AAGCAUGGGAG G UUAAG GGU A AGAAACCU AAA UUAAAAA CCU UAGUA AG G ACA UUAU C ACUCCUU C G - U G - C AAUU AC G U C -AACCUAUA AAU C
Stem-loop sequence	AGCAUUCCUCACAUUCUUCGUACCCUUGUGAAUUUUUUAGUAUUUUUGGAUUUGGAUUUUUCCGGAAAUCAUUUCACCACCUCCUAUGUGUAAUGAACCUAUUUAAACAAUAUCCAAGCGAUAUGAUGUCCCAAAAAAUUUUAAAAACUCCAAAGAAGUGGUGAAUUGGGAGGGUACGAACAAUGUGAGGAUUCCUCA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

FQ381482.1

ncRNA:24	CC-AUGCUUCUUACACUCCUUACGA	1
	\|\|-\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*
targets:654	GGAUUUGAAGAUUGUGAGGAAUGCC	678

2.0

Vitis vinifera clone SS0ABP1YI04

coding protein

XM_002283697.4

ncRNA:24	CC-AUGCUUCUUACACUCCUUACGA	1
	\|\|-\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*
targets:678	GGAUUUGAAGAUUGUGAGGAAUGCC	702

2.0

PREDICTED: Vitis vinifera ribokinase (LOC100265800), mRNA

coding protein

KA154363.1

ncRNA:24	CC-AUGCUUCUUACACUCCUUACGA	1
	\|\|-\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*
targets:627	GGAUUUGAAGAUUGUGAGGAAUGCC	651

2.0

TSA: Vitis vinifera Locus_14715_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence

coding protein

XM_010663196.1

2.5

PREDICTED: Vitis vinifera conserved oligomeric Golgi complex subunit 4 (LOC100259252), mRNA

coding protein