Search result

BaseInfo

ncRNA ID	novel_vvi_miR695
Species	Vitis vinifera
Class	miRNA
Genome position	Chr18:25154463-25154583 [-]
Reference genome	12X
Source	SRR1528358
Length	24
Mature sequence(if miRNA)	98 - ACAUGCUGAUUGUAUUGAUUGCCU - 121
Stem-loop(if miRNA)	--     - U     U      U  CU    UAUUUC  UCA   UA      CU    U  G   ACAUG C GAUUG AUUGAU GC  AUCU      GC   GCA  GUGAUU  GAUA UU C   ||||| | ||||| |||||| ||  ||||      ||   |||  ||||||  |||| || C   UGUAC G UUAGC UGAUUG UG  UAGG      UG   CGU  CGCUAG  UUAU AG A GC     A U     U      U  CU    ----UA  -UA   UC      UC    U  U
Stem-loop sequence	ACAUGCUGAUUGUAUUGAUUGCCUAUCUUAUUUCGCUCAGCAUAGUGAUUCUGAUAUUUGCCAUGAUUAUUCUGAUCGCCUUGCAUGUAUGGAUUCGUUGUUAGUUCGAUUUGACAUGUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA140214.1	ncRNA:24   UCCGUUAGUUAUGUUAGUCGUACA   1   |||||||||||||||||||||||| targets:126   AGGCAAUCAAUACAAUCAGCAUGU   149 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_32310_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_003634787.3	ncRNA:24   UCCGUUAGUUAUGUUAGUCGUACA   1   |*|=||||||*||||||||*|||| targets:311   AUGUAAUCAAAACAAUCAGAAUGU   334 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable D-amino acid oxidase PA4548 (LOC100251626), mRNA	NA	coding protein	psRNATarget
KA168099.1	ncRNA:24   UCCGUUAGUUAUGUUAGUCGUACA   1   |*|=||||||*||||||||*|||| targets:161   AUGUAAUCAAAACAAUCAGAAUGU   184 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_19104_Transcript_7/8_Confidence_0.450.Vivi mRNA sequence	NA	coding protein	psRNATarget