Search result

BaseInfo

ncRNA ID novel_vvi_miR693
Species Vitis vinifera
Class miRNA
Genome position Chr17:2378220-2378305 [-]
Reference genome 12X
Source SRR1528358;SRR1048207
Length 21
Mature sequence(if miRNA) 1 - CGGGAGAUGACUACUGGAAGC - 21
Stem-loop(if miRNA) --      C          AA  U      AAAC UG   --  C
  UUCCAG AGUCAUCUCC  GG GGAGCA    U  AUU  GC C
  |||||| ||||||||||  || ||||||    |  |||  ||
  AAGGUC UCAGUAGAGG  CC CCUCGU    A  UAA  CG U
CG      A          GC  U      --CU GU   GU  U
Stem-loop sequence UUCCAGCAGUCAUCUCCAAGGUGGAGCAAAACUUGAUUGCCCUUGCUGAAUUGAUCUGCUCCUCCCGGGAGAUGACUACUGGAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010658062.2
ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1
  |=|**|||||||||||||||*
targets:1238   GUUGGCAGUAGUCAUCUCCCU   1258

3.0 PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010658063.2
ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1
  |=|**|||||||||||||||*
targets:1392   GUUGGCAGUAGUCAUCUCCCU   1412

3.0 PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X4, mRNA NA coding protein psRNATarget
XM_002284712.3
ncRNA:21   CGAAGGUCAUCAGUAGAGGGC   1
  |=|**|||||||||||||||*
targets:1422   GUUGGCAGUAGUCAUCUCCCU   1442

3.0 PREDICTED: Vitis vinifera uncharacterized LOC100256125 (LOC100256125), transcript variant X1, mRNA NA coding protein psRNATarget