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BaseInfo

ncRNA ID novel_vvi_miR685
Species Vitis vinifera
Class miRNA
Genome position Chr10:6320601-6320684 [+]
Reference genome 12X
Source SRR1528358
Length 24
Mature sequence(if miRNA) 1 - CAUUUUCAUUUCUCGUCUUGCACU - 24
Stem-loop(if miRNA) --CA             -UC     C   G      C     C
    UUUUCAUUUCUCG   UUGCA UUA GUGAGG GUCAC U
    |||||||||||||   ||||| ||| |||||| |||||
    AAAGGUAGAGAGU   GACGU AAU UACUCU CGGUG A
CGGA             UCU     A   A      -     G
Stem-loop sequence CAUUUUCAUUUCUCGUCUUGCACUUAGGUGAGGCGUCACCUAGGUGGCUCUCAUAUAAAUGCAGUCUUGAGAGAUGGAAAAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA159501.1
ncRNA:24   UCACGUUCUGCUCUUUACUUUUAC   1
  |***|||||=|||||||*||||||
targets:1531   AAAUCAAGAUGAGAAAUAAAAAUG   1554

2.5 TSA: Vitis vinifera Locus_716_Transcript_7/9_Confidence_0.364.Vivi mRNA sequence NA coding protein psRNATarget