ncRNA ID | novel_vvi_miR685 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr10:6320601-6320684 [+] |
Reference genome | 12X |
Source | SRR1528358 |
Length | 24 |
Mature sequence(if miRNA) | 1 - CAUUUUCAUUUCUCGUCUUGCACU - 24 |
Stem-loop(if miRNA) |
--CA             -UC     C   G      C     C     UUUUCAUUUCUCG   UUGCA UUA GUGAGG GUCAC U     |||||||||||||   ||||| ||| |||||| |||||     AAAGGUAGAGAGU   GACGU AAU UACUCU CGGUG A CGGA             UCU     A   A      -     G |
Stem-loop sequence | CAUUUUCAUUUCUCGUCUUGCACUUAGGUGAGGCGUCACCUAGGUGGCUCUCAUAUAAAUGCAGUCUUGAGAGAUGGAAAAGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA159501.1 |
|
2.5 | TSA: Vitis vinifera Locus_716_Transcript_7/9_Confidence_0.364.Vivi mRNA sequence | NA | coding protein | psRNATarget |