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BaseInfo

ncRNA ID novel_vvi_miR681
Species Vitis vinifera
Class miRNA
Genome position Chr16:1167884-1167938 [+]
Reference genome 12X
Source SRR1528358
Length 24
Mature sequence(if miRNA) 32 - UUGAGAACAAUUUUUAAGAACAGU - 55
Stem-loop(if miRNA) --            C      G    A
  UGUUUUUGAAAA UGUUCU GAAA C
  |||||||||||| |||||| |||| A
  ACAAGAAUUUUU ACAAGA UUUU G
UG            A      G    U
Stem-loop sequence UGUUUUUGAAAACUGUUCUGGAAAACAGUUUUUGAGAACAAUUUUUAAGAACAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA154251.1
ncRNA:24   UGACAAGAAUUUUUAACAAGAGUU   1
  |=*||||||||||||*||||||||
targets:630   AUAGUUCUUAAAAAUAGUUCUCAA   653

1.5 TSA: Vitis vinifera Locus_1611_Transcript_8/10_Confidence_0.513.Vivi mRNA sequence NA coding protein psRNATarget
KA137959.1
ncRNA:24   UGACAAGAAUUUUUAACAAGAGUU   1
  *=|*||=|||||||||*|||||||
targets:3659   UUUAUUUUUAAAAAUUAUUCUCAA   3682

2.5 TSA: Vitis vinifera Locus_1006_Transcript_31/34_Confidence_0.062.Vivi mRNA sequence NA coding protein psRNATarget