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BaseInfo

ncRNA ID novel_vvi_miR680
Species Vitis vinifera
Class miRNA
Genome position Chr16:10032008-10032067 [+]
Reference genome 12X
Source SRR1528358;SRR1049291
Length 24
Mature sequence(if miRNA) 1 - UCCCAUCACUUAUCCUAUCCUAUG - 24
Stem-loop(if miRNA) --              C           CA
  UCCCAUCACUUAUC UAUCCUAUGUU  A
  |||||||||||||| |||||||||||
  AGGGUAGUGAAUAG AUAGGAUACAA  C
AU              A           AC
Stem-loop sequence UCCCAUCACUUAUCCUAUCCUAUGUUCAACCAAACAUAGGAUAAGAUAAGUGAUGGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA153571.1
ncRNA:24   GUAUCCUAUCCUAUUCACUACCCU   1
  |||=*|||||||||||||||*|||
targets:170   CAUGUGAUAGGAUAAGUGAUAGGA   193

1.5 TSA: Vitis vinifera Locus_69959_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget