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BaseInfo

ncRNA ID novel_vvi_miR678
Species Vitis vinifera
Class miRNA
Genome position Chr10:1800904-1800983 [-]
Reference genome 12X
Source SRR1528358;SRR1528371;SRR1528380;SRR1528381;SRR1528391;SRR1528406
Length 24
Mature sequence(if miRNA) 57 - UUAAAGCCGUAGUUGGUGACUAUG - 80
Stem-loop(if miRNA) --                         -C      CA  U
  UUAAAGCCGUAGUUGGUGACUAUGG  UUGAAU  UU U
  |||||||||||||||||||||||||  ||||||  || U
  AAUUUUGGCAUCAACCACUGAUGUC  AACUUA  AA A
CA                         AA      AG  A
Stem-loop sequence UUAAAGCCGUAGUUGGUGACUAUGGCUUGAAUCAUUUUUAAAAGAAUUCAAAACUGUAGUCACCAACUACGGUUUUAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010658998.2
ncRNA:24   GUAUCAGUGGUUGAUGCCGAAAUU   1
  ||||||||||||||||||||||||
targets:46   CAUAGUCACCAACUACGGCUUUAA   69

0.0 PREDICTED: Vitis vinifera mucin-5AC-like (LOC104880885), transcript variant X2, mRNA NA coding protein psRNATarget