ncRNA ID | novel_vvi_miR675 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr1:7909595-7909713 [-] |
Reference genome | 12X |
Source | SRR1528358 |
Length | 23 |
Mature sequence(if miRNA) | 1 - AAAUUACUUUUAGCUGAAUAGAA - 23 |
Stem-loop(if miRNA) |
--                     A      C                 C    CC   U   CUAUUCAGUUAAAAGUAAUUU UUGAUA CAUCCAAUAUAACUAAA UGAA  UAU A   ||||||||||||||||||||| |||||| ||||||||||||||||| ||||  ||| A   GAUAAGUCGAUUUUCAUUAAA AACUGU GUAGGUUGUAUUGAUUU ACUU  AUA U AA                     C      A                 C    AA   A |
Stem-loop sequence | CUAUUCAGUUAAAAGUAAUUUAUUGAUACCAUCCAAUAUAACUAAACUGAACCUAUUAAUAAUAAAUUCACUUUAGUUAUGUUGGAUGAUGUCAACAAAUUACUUUUAGCUGAAUAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA161886.1 |
|
2.5 | TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA158597.1 |
|
3.0 | TSA: Vitis vinifera Locus_26355_Transcript_1/2_Confidence_0.900.Vivi mRNA sequence | NA | coding protein | psRNATarget |