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BaseInfo

ncRNA ID novel_vvi_miR675
Species Vitis vinifera
Class miRNA
Genome position Chr1:7909595-7909713 [-]
Reference genome 12X
Source SRR1528358
Length 23
Mature sequence(if miRNA) 1 - AAAUUACUUUUAGCUGAAUAGAA - 23
Stem-loop(if miRNA) --                     A      C                 C    CC   U
  CUAUUCAGUUAAAAGUAAUUU UUGAUA CAUCCAAUAUAACUAAA UGAA  UAU A
  ||||||||||||||||||||| |||||| ||||||||||||||||| ||||  ||| A
  GAUAAGUCGAUUUUCAUUAAA AACUGU GUAGGUUGUAUUGAUUU ACUU  AUA U
AA                     C      A                 C    AA   A
Stem-loop sequence CUAUUCAGUUAAAAGUAAUUUAUUGAUACCAUCCAAUAUAACUAAACUGAACCUAUUAAUAAUAAAUUCACUUUAGUUAUGUUGGAUGAUGUCAACAAAUUACUUUUAGCUGAAUAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA161886.1
ncRNA:23   AAGAUAAGUCGAUUUUCAUUAAA   1
  ||=||||=||||||||||||*||
targets:197   UUUUAUUUAGCUAAAAGUAACUU   219

2.5 TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget
KA158597.1
ncRNA:23   AAGAUAAGUCGAUUUUCAUUAAA   1
  ||=|*||=*||||||||||||||
targets:1557   UUUUUUUUUGCUAAAAGUAAUUU   1579

3.0 TSA: Vitis vinifera Locus_26355_Transcript_1/2_Confidence_0.900.Vivi mRNA sequence NA coding protein psRNATarget