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BaseInfo

ncRNA ID novel_vvi_miR674
Species Vitis vinifera
Class miRNA
Genome position Chr15:99965-100068 [-]
Reference genome 12X
Source SRR1528358;SRR1528359;SRR1528364;SRR1528374
Length 24
Mature sequence(if miRNA) 1 - AUUUUCAUGUUGGGUCUUCUGAUU - 24
Stem-loop(if miRNA) --  U    GU             G             UUGCA      AAAU
  UC GAAG  CCAACAUGGAAAU AUGCUUAAAACAA     AGUAGU    C
  || ||||  ||||||||||||| |||||||||||||     ||||||    A
  AG CUUC  GGUUGUACUUUUA UACGAAUUUUGUU     UUAUCG    A
UU  U    UG             A             ---UA      AACA
Stem-loop sequence UCUGAAGGUCCAACAUGGAAAUGAUGCUUAAAACAAUUGCAAGUAGUAAAUCAAACAAGCUAUUAUUUGUUUUAAGCAUAAUUUUCAUGUUGGGUCUUCUGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA145166.1
ncRNA:24   UUAGUCUUCUGGGUUGUACUUUUA   1
  |||--|||*=||||||||||||||
targets:1011   AAU--GAAAGCCCAACAUGAAAAU   1032

2.0 TSA: Vitis vinifera Locus_8476_Transcript_3/7_Confidence_0.389.Vivi mRNA sequence NA coding protein psRNATarget