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BaseInfo

ncRNA ID novel_vvi_miR673
Species Vitis vinifera
Class miRNA
Genome position Chr15:4116332-4116428 [-]
Reference genome 12X
Source SRR1528358;SRR1528371;SRR1528406
Length 21
Mature sequence(if miRNA) 77 - CUGAUUGAUGAUCAAGGAGCC - 97
Stem-loop(if miRNA) --     U          GA   U           CC     A      
  CUGAU GAUGAUCAAG  GCC AGAAGAAAUUG  GAAUG GAAAUUG
  ||||| ||||||||||  ||| |||||||||||  ||||| ||||||C
  GACUA CUACUAGUUC  UGG UCUUUUUUAAC  CUUAC CUUUAGU
UG     U          --   C           UA     A      
Stem-loop sequence CUGAUUGAUGAUCAAGGAGCCUAGAAGAAAUUGCCGAAUGAGAAAUUGCUGAUUUCACAUUCAUCAAUUUUUUCUCGGUCUUGAUCAUCUAUCAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA140793.1
ncRNA:21   CCGAGGAACUAGUAGUUAGUC   1
  |*|||||*||||||||||||*
targets:4356   GCCUCCUGGAUCAUCAAUCAU   4376

2.0 TSA: Vitis vinifera Locus_13576_Transcript_3/4_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget
XM_010655137.2
ncRNA:21   CCGAGGAACUAGUAGUUAGUC   1
  ||**||||||||||||||||*
targets:1182   GGGACCUUGAUCAUCAAUCAU   1202

3.0 PREDICTED: Vitis vinifera cytosolic ascorbate peroxidase (APX), transcript variant X1, mRNA NA coding protein psRNATarget