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BaseInfo

ncRNA ID	novel_vvi_miR666
Species	Vitis vinifera
Class	miRNA
Genome position	Chr15:18461458-18461624 [-]
Reference genome	12X
Source	SRR1528358;SRR1528387
Length	20
Mature sequence(if miRNA)	1 - UUUGGUUUGAAGGGAGCUCU - 20
Stem-loop(if miRNA)	--    G    -  UU       CAA   AGU      -UGUUA     G  G       G U       U  U U   ---   UA   AGCU CCCU CA  CCAAAUU   AAG   AGAAGG      CAUCU CU GUUCAUG A ACCUUUG AG G ACA   GAU  A   |||| |||| ||  |||||||   |||   ||||||      ||||| || ||||||| | ||||||| || | |||   |||   UCGA GGGA GU  GGUUUAA   UUC   UCUUCC      GUAGA GG UAAGUAC U UGGGAAU UC C UGU   CUA  U UC    -    A  UU       -UG   AGU      UUUGGA     G  G       G U       U  C C   AAC   UA
Stem-loop sequence	AGCUGCCCUCAUUCCAAAUUCAAAAGAGUAGAAGGUGUUACAUCUGCUGGUUCAUGGAUACCUUUGUAGUGUACAGAUUAAUAUAUCCAAUGUCCCCUUUAAGGGUUUGCAUGAAUGGGGAGAUGAGGUUUCCUUCUUGACUUGUAAUUUGGUUUGAAGGGAGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010657187.2	ncRNA:20   UCUCGAGGGAAGUUUGGUUU   1   |||||*|||||||||||||| targets:1030   AGAGCACCCUUCAAACCAAA   1049 Target Full Sequence	1.0	PREDICTED: Vitis vinifera uncharacterized LOC104880484 (LOC104880484), mRNA	NA	coding protein	psRNATarget
KA154464.1	ncRNA:20   UCUCGAGGGAAGUUUGGUUU   1   |||||*|||||||||||||| targets:843   AGAGCCCCCUUCAAACCAAA   862 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_1556_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010645844.2	ncRNA:20   UCUCGAGGGAAGUUUGGUUU   1   |||||*|||||||||||||| targets:1401   AGAGCCCCCUUCAAACCAAA   1420 Target Full Sequence	1.0	PREDICTED: Vitis vinifera protein SPEAR2 (LOC104877499), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019216918.1	ncRNA:20   UCUCGAGGGAAGUUUGGUUU   1   |||||*|||||||||||||| targets:1316   AGAGCCCCCUUCAAACCAAA   1335 Target Full Sequence	1.0	PREDICTED: Vitis vinifera protein SPEAR2 (LOC104877499), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_002277967.3	ncRNA:20   UCUCGAGGGAAGUUUGGUUU   1   ||||||||||||||=||||* targets:1976   AGAGCUCCCUUCAAGCCAAU   1995 Target Full Sequence	2.5	PREDICTED: Vitis vinifera protein ODORANT1 (LOC100262343), mRNA	NA	coding protein	psRNATarget