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BaseInfo

ncRNA ID	novel_vvi_miR653
Species	Vitis vinifera
Class	miRNA
Genome position	Chr14:4608060-4608154 [+]
Reference genome	12X
Source	SRR1528358
Length	21
Mature sequence(if miRNA)	75 - UUCUGACCUGUCGUGCAUCCG - 95
Stem-loop(if miRNA)	--U         UCA    U   U         -CAUU    CA    C    GUGCAUGAU   GUUA GGA UCGGACGAC     GUUA  UGUU G    |||||||||   |||| ||| |||||||||     ||||  ||||    UACGUGCUG   CAGU CUU AGUUUGCUG     UAGU  AUAG A GCC         -UC    -   U         UUCUU    AG    U
Stem-loop sequence	UGUGCAUGAUUCAGUUAUGGAUUCGGACGACCAUUGUUACAUGUUCGAUGAUAGAUGAUUUCUUGUCGUUUGAUUUCUGACCUGUCGUGCAUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA160151.1	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   ||||||||||||||||||||| targets:277   CGGAUGCACGACAGGUCAGAA   297 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_33141_Transcript_3/3_Confidence_0.727.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019226508.1	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:363   UCGAUGGACAACAGGUCAGAA   383 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019226507.1	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:361   UCGAUGGACAACAGGUCAGAA   381 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_010665638.2	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:361   UCGAUGGACAACAGGUCAGAA   381 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010665636.2	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:196   UCGAUGGACAACAGGUCAGAA   216 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019226506.1	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:358   UCGAUGGACAACAGGUCAGAA   378 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010665635.2	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:357   UCGAUGGACAACAGGUCAGAA   377 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable cyclic nucleotide-gated ion channel 20, chloroplastic (LOC100246030), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA151111.1	ncRNA:21   GCCUACGUGCUGUCCAGUCUU   1   =*||||*||*||||||||||| targets:389   UCGAUGGACAACAGGUCAGAA   409 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3867_Transcript_8/10_Confidence_0.543.Vivi mRNA sequence	NA	coding protein	psRNATarget