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BaseInfo

ncRNA ID novel_vvi_miR636
Species Vitis vinifera
Class miRNA
Genome position Chr13:21038009-21038138 [+]
Reference genome 12X
Source SRR1528358;SRR1528363
Length 22
Mature sequence(if miRNA) 1 - UUGAUUACAGUGGGAUGGGACC - 22
Stem-loop(if miRNA) --         G     U    C     ---AAA    A                  U      U GA
  UUGAUUACA UGGGA GGGA CUAUG      UUAG AUUCAUUUCCGAAUCUGU AGUAUA G  G
  ||||||||| ||||| |||| |||||      |||| |||||||||||||||||| |||||| |
  AACUAAUGU GUCUU CCCU GGUAC      AAUC UAGGUAAAGGUUUAGAUG UCAUAU C  U
CA         -     U    U     CCUUAA    C                  -      - AG
Stem-loop sequence UUGAUUACAGUGGGAUGGGACCUAUGAAAUUAGAAUUCAUUUCCGAAUCUGUUAGUAUAUGGAGUGACUAUACUGUAGAUUUGGAAAUGGAUCCUAAAAUUCCCAUGGUUCCCUUUCUGUGUAAUCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002277419.3
ncRNA:22   CCAGGGUAGGGUGACAUUAGUU   1
  ***|||||=||||||*||||||
targets:2255   CAGCCCAUUCCACUGAAAUCAA   2276

2.5 PREDICTED: Vitis vinifera formin-like protein 4 (LOC100249203), mRNA NA coding protein psRNATarget
XM_019220574.1
ncRNA:22   CCAGGGUAGGGUGACAUUAGUU   1
  ***|||||=||||||*||||||
targets:2412   CAGCCCAUUCCACUGAAAUCAA   2433

2.5 PREDICTED: Vitis vinifera formin-like protein 4 (LOC104879926), mRNA NA coding protein psRNATarget