ncRNA ID | novel_vvi_miR636 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr13:21038009-21038138 [+] |
Reference genome | 12X |
Source | SRR1528358;SRR1528363 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUGAUUACAGUGGGAUGGGACC - 22 |
Stem-loop(if miRNA) |
--         G     U    C     ---AAA    A                  U      U GA   UUGAUUACA UGGGA GGGA CUAUG      UUAG AUUCAUUUCCGAAUCUGU AGUAUA G  G   ||||||||| ||||| |||| |||||      |||| |||||||||||||||||| |||||| |   AACUAAUGU GUCUU CCCU GGUAC      AAUC UAGGUAAAGGUUUAGAUG UCAUAU C  U CA         -     U    U     CCUUAA    C                  -      - AG |
Stem-loop sequence | UUGAUUACAGUGGGAUGGGACCUAUGAAAUUAGAAUUCAUUUCCGAAUCUGUUAGUAUAUGGAGUGACUAUACUGUAGAUUUGGAAAUGGAUCCUAAAAUUCCCAUGGUUCCCUUUCUGUGUAAUCAAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_002277419.3 |
|
2.5 | PREDICTED: Vitis vinifera formin-like protein 4 (LOC100249203), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_019220574.1 |
|
2.5 | PREDICTED: Vitis vinifera formin-like protein 4 (LOC104879926), mRNA | NA | coding protein | psRNATarget |