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BaseInfo

ncRNA ID novel_vvi_miR635
Species Vitis vinifera
Class miRNA
Genome position Chr13:2905399-2905489 [+]
Reference genome 12X
Source SRR1528358;SRR1528387
Length 24
Mature sequence(if miRNA) 68 - CUAAGAAUGCUUUGUAGAAUCACU - 91
Stem-loop(if miRNA) --        A   A  A      U                AUUU
  UGAUUUUA GAA CG UUUUAG GUUUUUAAUAUUUGAA    U
  |||||||| ||| || |||||| ||||||||||||||||    U
  ACUAAGAU UUU GU AGAAUC UAAAGAUUGUGGACUU    U
UC        G   C  A      U                ACUA
Stem-loop sequence UGAUUUUAAGAAACGAUUUUAGUGUUUUUAAUAUUUGAAAUUUUUUAUCAUUCAGGUGUUAGAAAUUCUAAGAAUGCUUUGUAGAAUCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA141014.1
ncRNA:24   UCACUAAGAUGUUUCGUAAGAAUC   1
  ||||||||||*||||||||=||||
targets:2660   AGUGAUUCUAGAAAGCAUUUUUAG   2683

2.5 TSA: Vitis vinifera Locus_7473_Transcript_8/9_Confidence_0.625.Vivi mRNA sequence NA coding protein psRNATarget