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BaseInfo

ncRNA ID novel_vvi_miR632
Species Vitis vinifera
Class miRNA
Genome position Chr1:2713340-2713428 [+]
Reference genome 12X
Source SRR1528358
Length 24
Mature sequence(if miRNA) 1 - CUUGAACGGAAUCCGACCUCUAAC - 24
Stem-loop(if miRNA) --C            --------------------------CG   UCUAACUUGAG
   UUGAACGGAAUC                            ACC           G
   ||||||||||||                            |||           U
   GAUUUGCCUUAG                            UUG           A
UUA            ACUUGAAAUUACUUUACUCUAACUCAAC   AAACACAACAC
Stem-loop sequence CUUGAACGGAAUCCGACCUCUAACUUGAGGUACACAACACAAAGUUCAACUCAAUCUCAUUUCAUUAAAGUUCAGAUUCCGUUUAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA161692.1
ncRNA:24   CAAUCUCCAGCCUAAGGCAAGUUC   1
  **||*=|||||||||=||||||||
targets:1275   CCUACGGGUCGGAUUUCGUUCAAG   1298

2.5 TSA: Vitis vinifera Locus_1923_Transcript_11/11_Confidence_0.423.Vivi mRNA sequence NA coding protein psRNATarget
XM_002277003.3
ncRNA:24   CAAUCUCCAGCCUAAGGCAAGUUC   1
  **||*=|||||||||=||||||||
targets:1337   CCUACGGGUCGGAUUUCGUUCAAG   1360

2.5 PREDICTED: Vitis vinifera squamosa promoter-binding-like protein 7 (LOC100251222), mRNA NA coding protein psRNATarget
KA161693.1
ncRNA:24   CAAUCUCCAGCCUAAGGCAAGUUC   1
  **||*=|||||||||=||||||||
targets:1275   CCUACGGGUCGGAUUUCGUUCAAG   1298

2.5 TSA: Vitis vinifera Locus_1923_Transcript_3/11_Confidence_0.442.Vivi mRNA sequence NA coding protein psRNATarget
KA161694.1
ncRNA:24   CAAUCUCCAGCCUAAGGCAAGUUC   1
  **||*=|||||||||=||||||||
targets:1275   CCUACGGGUCGGAUUUCGUUCAAG   1298

2.5 TSA: Vitis vinifera Locus_1923_Transcript_5/11_Confidence_0.423.Vivi mRNA sequence NA coding protein psRNATarget
KA161691.1
ncRNA:24   CAAUCUCCAGCCUAAGGCAAGUUC   1
  **||*=|||||||||=||||||||
targets:3440   CCUACGGGUCGGAUUUCGUUCAAG   3463

2.5 TSA: Vitis vinifera Locus_1923_Transcript_9/11_Confidence_0.404.Vivi mRNA sequence NA coding protein psRNATarget
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