ncRNA ID | novel_vvi_miR627 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr12:22589016-22589074 [+] |
Reference genome | 12X |
Source | SRR1528358 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AACCAACAUAACUAAAGUGAACUU - 24 |
Stem-loop(if miRNA) |
--           C    G       AUA   AACCAACAUAA UAAA UGAACUU   A   ||||||||||| |||| |||||||   U   UUGGUUGUAUU AUUU AUUUGAA   C AG           A    G       CAA |
Stem-loop sequence | AACCAACAUAACUAAAGUGAACUUAUAAUCAACAAGUUUAGUUUAAUUAUGUUGGUUGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA172889.1 |
|
1.5 | TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA139149.1 |
|
1.5 | TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence | NA | coding protein | psRNATarget |