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BaseInfo

ncRNA ID novel_vvi_miR627
Species Vitis vinifera
Class miRNA
Genome position Chr12:22589016-22589074 [+]
Reference genome 12X
Source SRR1528358
Length 24
Mature sequence(if miRNA) 1 - AACCAACAUAACUAAAGUGAACUU - 24
Stem-loop(if miRNA) --           C    G       AUA
  AACCAACAUAA UAAA UGAACUU   A
  ||||||||||| |||| |||||||   U
  UUGGUUGUAUU AUUU AUUUGAA   C
AG           A    G       CAA
Stem-loop sequence AACCAACAUAACUAAAGUGAACUUAUAAUCAACAAGUUUAGUUUAAUUAUGUUGGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA172889.1
ncRNA:24   UUCAAGUGAAAUCAAUACAACCAA   1
  ||||||||||||*|||||||||||
targets:3901   AAGUUCACUUUAAUUAUGUUGGUU   3924

1.5 TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence NA coding protein psRNATarget
KA139149.1
ncRNA:24   UUCAAGUGAAAUCAAUACAACCAA   1
  ||||||||||||*|||||||||||
targets:2025   AAGUUCACUUUAUUUAUGUUGGUU   2048

1.5 TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence NA coding protein psRNATarget