ncRNA ID | novel_vvi_miR619 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr1:22513396-22513508 [+] |
Reference genome | 12X |
Source | SRR1528357 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UCUUUCACAGAAAUACACUGU - 21 |
Stem-loop(if miRNA) |
--       C              A   UC                  CUUUG   GU   UCUUUCA AGAAAUACACUGUU AUG  UCCUUUCUAUUUCUAAAU     GUA  G   ||||||| |||||||||||||| |||  ||||||||||||||||||     |||  A   AGAAAGU UCUUUAUGUGACAA UAU  AGGAAAGAUAAAGAUUUA     CGU  A GA       C              C   GA                  ----A   GU |
Stem-loop sequence | UCUUUCACAGAAAUACACUGUUAAUGUCUCCUUUCUAUUUCUAAAUCUUUGGUAGUGAAUGUGCAAUUUAGAAAUAGAAAGGAAGUAUCAACAGUGUAUUUCUCUGAAAGAAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA151013.1 |
|
3.0 | TSA: Vitis vinifera Locus_9381_Transcript_3/4_Confidence_0.750.Vivi mRNA sequence | NA | coding protein | psRNATarget |