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BaseInfo

ncRNA ID novel_vvi_miR619
Species Vitis vinifera
Class miRNA
Genome position Chr1:22513396-22513508 [+]
Reference genome 12X
Source SRR1528357
Length 21
Mature sequence(if miRNA) 1 - UCUUUCACAGAAAUACACUGU - 21
Stem-loop(if miRNA) --       C              A   UC                  CUUUG   GU
  UCUUUCA AGAAAUACACUGUU AUG  UCCUUUCUAUUUCUAAAU     GUA  G
  ||||||| |||||||||||||| |||  ||||||||||||||||||     |||  A
  AGAAAGU UCUUUAUGUGACAA UAU  AGGAAAGAUAAAGAUUUA     CGU  A
GA       C              C   GA                  ----A   GU
Stem-loop sequence UCUUUCACAGAAAUACACUGUUAAUGUCUCCUUUCUAUUUCUAAAUCUUUGGUAGUGAAUGUGCAAUUUAGAAAUAGAAAGGAAGUAUCAACAGUGUAUUUCUCUGAAAGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA151013.1
ncRNA:21   UGUCACA-UAAAGACACUUUCU   1
  ||*||||-||||||||||||||
targets:1735   ACUGUGUGAUUUCUGUGAAAGA   1756

3.0 TSA: Vitis vinifera Locus_9381_Transcript_3/4_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget