Search result

BaseInfo

ncRNA ID	novel_vvi_miR617
Species	Vitis vinifera
Class	miRNA
Genome position	Chr19:2471080-2471151 [+]
Reference genome	12X
Source	SRR1048201
Length	24
Mature sequence(if miRNA)	1 - CAGCUAAAAGUAACUUGUUGACAU - 24
Stem-loop(if miRNA)	--C            C          G AAGU    UU    AGCUAAAAGUAA UUGUUGACAU A    UUAA  A    |||||||||||| |||||||||| |    ||||    UCGAUUUUUAUU GAUAACUGUA U    AGUU  U AAU            A          G ----    UG
Stem-loop sequence	CAGCUAAAAGUAACUUGUUGACAUGAAAGUUUAAUUAUGUUUGAUGAUGUCAAUAGAUUAUUUUUAGCUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161886.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   |||||||||*|||||||||||||| targets:287   AUGUCAACAUGUUACUUUUAGCUG   310 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||||=|||||||||||||||*||| targets:1366   AUGUUAACAAGUUACUUUUAACUG   1389 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||||=|||||||||||||||*||| targets:1466   AUGUUAACAAGUUACUUUUAACUG   1489 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172889.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||*||||||||||||||||||=|| targets:3926   AUAUCAACAAGUUACUUUUAGUUG   3949 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||||||||||*||||||||||||* targets:3546   AUGUCAACAAAUUACUUUUAGCUA   3569 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167155.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||||||||||*||||||||||||* targets:3764   AUGUCAACAAAUUACUUUUAGCUA   3787 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   |||*|||||*|||||||||||=|| targets:1975   AUGCCAACAUGUUACUUUUAGUUG   1998 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   *|**=|||||||||*||||||||* targets:1942   UUAAUAACAAGUUAAUUUUAGCUA   1965 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
KA139149.1	ncRNA:24   UACAGUUGUUCAAUGAAAAUCGAC   1   ||*||||||||*|||||||||||* targets:2050   AUAUCAACAAGGUACUUUUAGCUU   2073 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1202_Transcript_8/9_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget