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BaseInfo

ncRNA ID novel_vvi_miR612
Species Vitis vinifera
Class miRNA
Genome position Chr1:1827985-1828060 [+]
Reference genome 12X
Source SRR1528357
Length 24
Mature sequence(if miRNA) 1 - AAGAGAUGUCUGGCCGAGUGAUGG - 24
Stem-loop(if miRNA) --       G     CC  --G      --  -      UU
  AAGAGAU UCUGG  GA   UGAUGG  UG AGGUAG  C
  ||||||| |||||  ||   ||||||  || ||||||
  UUCUCUA GGACC  CU   GCUACU  AC UCCGUU  A
AA       -     CU  AUA      GA  A      UG
Stem-loop sequence AAGAGAUGUCUGGCCGAGUGAUGGUGAGGUAGUUCAGUUUGCCUACAAGUCAUCGAUAUCUCCCAGGAUCUCUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019218845.1
ncRNA:24   GGU-AGUGAGCCGGUCUGUAGAGAA   1
  *||-|=|||||*|||||||||||*|
targets:2590   ACAGUUACUCGUCCAGACAUCUCCU   2614

2.5 PREDICTED: Vitis vinifera uncharacterized LOC109122310 (LOC109122310), mRNA NA coding protein psRNATarget
KA156386.1
ncRNA:24   GGU-AGUGAGCCGGUCUGUAGAGAA   1
  *||-|=|||||*|||||||||||*|
targets:3993   ACAGUUACUCGUCCAGACAUCUCCU   4017

2.5 TSA: Vitis vinifera Locus_20_Transcript_30/31_Confidence_0.026.Vivi mRNA sequence NA coding protein psRNATarget