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BaseInfo

ncRNA ID	novel_vvi_miR607
Species	Vitis vinifera
Class	miRNA
Genome position	Chr7:16285844-16285944 [+]
Reference genome	12X
Source	SRR1528357
Length	24
Mature sequence(if miRNA)	78 - AACACUUCCUAGAAUCACUGUCAA - 101
Stem-loop(if miRNA)	--C   A        A         C  ACA                 AU    AUA UGAUUUUG GAAGUGUUU UA   UUUUUAAUAUUUGAAAA  A    ||| |||||||| ||||||||| ||   |||||||||||||||||  A    UGU ACUAAGAU CUUCACAAA AU   AAAGAUUGUGAACUUUU  A AAC   C        C         A  CAA                 AA
Stem-loop sequence	CAUAAUGAUUUUGAGAAGUGUUUCUAACAUUUUUAAUAUUUGAAAAAUAAAAAUUUUCAAGUGUUAGAAAAACUAAAAACACUUCCUAGAAUCACUGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA166769.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||||=|||||*||||||||||||| targets:4590   UUGAUAGUGAAUCUAGGAAGUGUU   4613 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_5976_Transcript_9/10_Confidence_0.484.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159796.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||||||||||||=||||||||||| targets:2589   UUGACAGUGAUUUUAGGAAGUGUU   2612 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170094.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   |||==|||||||=||||||||||| targets:4079   UUGGUAGUGAUUUUAGGAAGUGUU   4102 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1667_Transcript_4/5_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138952.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   |||=||||||||||||*||||||| targets:812   UUGGCAGUGAUUCUAGAAAGUGUU   835 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_4335_Transcript_5/10_Confidence_0.588.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165748.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||*=||||||||=||||||||||| targets:1691   UUCGCAGUGAUUUUAGGAAGUGUU   1714 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1543_Transcript_6/7_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166591.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   |||==|||||||||||*||||||| targets:807   UUGGUAGUGAUUCUAGAAAGUGUU   830 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA135628.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   |||*=|||||||||||||||*||| targets:1180   UUGUUAGUGAUUCUAGGAAGCGUU   1203 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3102_Transcript_7/9_Confidence_0.412.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA152600.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||||||||*|||||||*||||||| targets:747   UUGACAGUAAUUCUAGAAAGUGUU   770 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_12264_Transcript_1/3_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ390097.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||||=|*|||||||||*||||||| targets:1104   UUGAUAAUGAUUCUAGAAAGUGUU   1127 Target Full Sequence	2.5	Vitis vinifera clone SS0AEB18YL19	NA	coding protein	psRNATarget
XM_002279172.4	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   ||||=|*|||||||||*||||||| targets:1163   UUGAUAAUGAUUCUAGAAAGUGUU   1186 Target Full Sequence	2.5	PREDICTED: Vitis vinifera peroxidase 20 (LOC100262575), mRNA	NA	coding protein	psRNATarget
KA159091.1	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   *||==||||||*|||||||||||* targets:2080   GUGGUAGUGAUCCUAGGAAGUGUG   2103 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_18263_Transcript_7/14_Confidence_0.457.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010649988.2	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   *||==||||||*|||||||||||* targets:3305   GUGGUAGUGAUCCUAGGAAGUGUG   3328 Target Full Sequence	2.5	PREDICTED: Vitis vinifera receptor-like protein kinase 5 (LOC100250973), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002278270.4	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   *||==||||||*|||||||||||* targets:3422   GUGGUAGUGAUCCUAGGAAGUGUG   3445 Target Full Sequence	2.5	PREDICTED: Vitis vinifera receptor-like protein kinase 5 (LOC100250973), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010654642.2	ncRNA:24   AACUGUCACUAAGAUCCUUCACAA   1   |||=*|||*|||||||*||||||| targets:2014   UUGGAAGUAAUUCUAGAAAGUGUU   2037 Target Full Sequence	2.5	PREDICTED: Vitis vinifera alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (LOC100264660), mRNA	NA	coding protein	psRNATarget