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BaseInfo

ncRNA ID novel_vvi_miR604
Species Vitis vinifera
Class miRNA
Genome position Chr6:5850856-5851001 [-]
Reference genome 12X
Source SRR1528357
Length 20
Mature sequence(if miRNA) 1 - UUGAUACAGACAAUUGAAAC - 20
Stem-loop(if miRNA) --         A     UG   -C         ---------  GUA                   AC   AAAAUAA
  UUCAGUUGU UGUAU  AAA  UUGUUCCUU         UG   AGAAAAUGGGGGAAGAGGA  CAG       G
  ||||||||| |||||  |||  |||||||||         ||   |||||||||||||||||||  |||
  AAGUUAACA ACAUA  UUU  AACAAGGAA         AC   UCUUUUACCUCCUUCUCCU  GUU       A
CA         G     GU   AA         CAGACAGUA  AAC                   AC   AAGACUU
Stem-loop sequence UUCAGUUGUAUGUAUUGAAACUUGUUCCUUUGGUAAGAAAAUGGGGGAAGAGGAACCAGAAAAUAAGAUUCAGAAUUGCAUCCUCUUCCUCCAUUUUCUCAACAAUGACAGACAAGGAACAAAAUUUUGAUACAGACAAUUGAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019216303.1
ncRNA:20   CAAAGUUAACAGACAUAGUU   1
  *|||=|||||||*|||||||
targets:386   UUUUUAAUUGUCCGUAUCAA   405

2.5 PREDICTED: Vitis vinifera probable protein phosphatase 2C 55 (LOC100257487), mRNA NA coding protein psRNATarget