ncRNA ID | novel_vvi_miR604 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr6:5850856-5851001 [-] |
Reference genome | 12X |
Source | SRR1528357 |
Length | 20 |
Mature sequence(if miRNA) | 1 - UUGAUACAGACAAUUGAAAC - 20 |
Stem-loop(if miRNA) |
--         A     UG   -C         ---------  GUA                   AC   AAAAUAA   UUCAGUUGU UGUAU  AAA  UUGUUCCUU         UG   AGAAAAUGGGGGAAGAGGA  CAG       G   ||||||||| |||||  |||  |||||||||         ||   |||||||||||||||||||  |||   AAGUUAACA ACAUA  UUU  AACAAGGAA         AC   UCUUUUACCUCCUUCUCCU  GUU       A CA         G     GU   AA         CAGACAGUA  AAC                   AC   AAGACUU |
Stem-loop sequence | UUCAGUUGUAUGUAUUGAAACUUGUUCCUUUGGUAAGAAAAUGGGGGAAGAGGAACCAGAAAAUAAGAUUCAGAAUUGCAUCCUCUUCCUCCAUUUUCUCAACAAUGACAGACAAGGAACAAAAUUUUGAUACAGACAAUUGAAAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_019216303.1 |
|
2.5 | PREDICTED: Vitis vinifera probable protein phosphatase 2C 55 (LOC100257487), mRNA | NA | coding protein | psRNATarget |