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BaseInfo

ncRNA ID	novel_vvi_miR599
Species	Vitis vinifera
Class	miRNA
Genome position	Chr4:6798632-6798824 [+]
Reference genome	12X
Source	SRR1528357
Length	24
Mature sequence(if miRNA)	1 - UUAUCCCAUCACCAACCAAACAUG - 24
Stem-loop(if miRNA)	--     C      C                A           UC         C                C  A         C     C    UU   UUAUC CAUCAC AACCAAACAUGGGAUA GAUAUAAUAUC  UUUUCUUAU CUAUCUCAUGCUAUAU CG CCAACCAAA AUGAC UUUA  G   ||||| |||||| |||||||||||||||| |||||||||||  ||||||||| |||||||||||||||| || ||||||||| ||||| ||||   AAUAG GUAGUG UUGGUUUGUACCCUAU CUAUAUUAUAG  GAGAGAGUA GAUAGAGUAUGAUAUA GU GGUUGGUUU UACUG AGAU  U AG     A      A                A           GA         A                U  C         A     -    UA
Stem-loop sequence	UUAUCCCAUCACCAACCAAACAUGGGAUAAGAUAUAAUAUCUCUUUUCUUAUCCUAUCUCAUGCUAUAUCCGACCAACCAAACAUGACCUUUAUUGUAUUAGAGUCAUAUUUGGUUGGCUGUAUAUAGUAUGAGAUAGAAUGAGAGAGAGGAUAUUAUAUCAUAUCCCAUGUUUGGUUAGUGAUGAGAUAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA171119.1	ncRNA:24   GUAC-AAACCAACCACUACCCUAUU   1   *|||-|||||*|||||||||||*|| targets:696   AAUGAUUUGGCUGGUGAUGGGACAA   720 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_15631_Transcript_2/7_Confidence_0.389.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002284098.3	ncRNA:24   GUAC-AAACCAACCACUACCCUAUU   1   *|||-|||||*|||||||||||*|| targets:562   AAUGAUUUGGCUGGUGAUGGGACAA   586 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ruBisCO large subunit-binding protein subunit beta, chloroplastic (LOC100261815), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010656337.2	ncRNA:24   GUAC-AAACCAACCACUACCCUAUU   1   *|||-|||||*|||||||||||*|| targets:573   AAUGAUUUGGCUGGUGAUGGGACAA   597 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ruBisCO large subunit-binding protein subunit beta, chloroplastic (LOC100261815), transcript variant X1, mRNA	NA	coding protein	psRNATarget