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BaseInfo

ncRNA ID novel_vvi_miR594
Species Vitis vinifera
Class miRNA
Genome position Chr4:13164198-13164411 [+]
Reference genome 12X
Source SRR1528357
Length 25
Mature sequence(if miRNA) 1 - AAGGCCAGAGGCCCAGAGCCGUGGC - 25
Stem-loop(if miRNA) -     C                                                            A         UACUC   U  UACCAGAA      U    AUAA
 AAGGC AGAGGCCCAGAGCCGUGGCCCCUCAAUCCACCAAUUGUUUAUUUGUUCCUUUUAUAAAGG GGUGUCCCC     AGA GG        GAUGGU GGAC    G
 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||| ||        |||||| ||||
 UUCCG UCUCCGGGUCUCGGCACCGGGGAGUUAGGUGGUUAACAAAUAAACAGGGAAAAUAUUUCC CCGCAGGGG     UCU CC        CUAUCA CCUG    G
C     A                                                            C         ----U   -  ----UAAG      U    AUUU
Stem-loop sequence AAGGCCAGAGGCCCAGAGCCGUGGCCCCUCAAUCCACCAAUUGUUUAUUUGUUCCUUUUAUAAAGGAGGUGUCCCCUACUCAGAUGGUACCAGAAGAUGGUUGGACAUAAGGUUUAGUCCUACUAUCGAAUCCUCUUGGGGACGCCCCCUUUAUAAAAGGGACAAAUAAACAAUUGGUGGAUUGAGGGGCCACGGCUCUGGGCCUCUAGCCUUC