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BaseInfo

ncRNA ID novel_vvi_miR577
Species Vitis vinifera
Class miRNA
Genome position Chr14:24560629-24560718 [-]
Reference genome 12X
Source SRR1528357;SRR1528369;SRR1528370;SRR1528371;SRR1528375;SRR1528376;SRR1528387;SRR1528405;SRR1528407;SRR1528409;SRR1528410;SRR1528414
Length 22
Mature sequence(if miRNA) 69 - CUGAACUCUCUCCCUCAUGGCC - 90
Stem-loop(if miRNA) --         CU     A    C     A      A   GAAUG  U
  CUGAACUCU  CCCUC UGGC UUUCU AGCUUU UCC     UC U
  |||||||||  ||||| |||| ||||| |||||| |||     ||
  GACUUGAGG  GGGAG ACCG AAGGG UCGAAG AGG     AG A
UA         -U     A    -     G      -   ---AA  A
Stem-loop sequence CUGAACUCUCUCCCUCAUGGCCUUUCUAAGCUUUAUCCGAAUGUCUUAAGAAAGGAGAAGCUGGGGAAGCCAAGAGGGUGGAGUUCAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002267502.3
ncRNA:22   CCGGUA-CUCCCUCUCUCAAGUC   1
  *|||*|-||||||||||||||||
targets:1345   AGCCUUUGAGGGAGAGAGUUCAG   1367

3.0 PREDICTED: Vitis vinifera scarecrow-like protein 21 (LOC100256348), mRNA NA coding protein psRNATarget