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BaseInfo

ncRNA ID	novel_vvi_miR576
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:2083390-2083486 [-]
Reference genome	12X
Source	SRR1528357;SRR1528407
Length	21
Mature sequence(if miRNA)	77 - AAAAUGGCUGAAAAGAAACGA - 97
Stem-loop(if miRNA)	--       CU         --C    AG           ------UA    A   AAAAUGG  GAAAAGAAA   GAAG  ACGAGUUGGAA        UUGC A   |||||||  |||||||||   ||||  |||||||||||        ||||   UUUUACU  CUUUUCUUU   UUUU  UGUUCAACCUU        AAUG C UC       -C         UUA    AA           UGAAUACA    A
Stem-loop sequence	AAAAUGGCUGAAAAGAAACGAAGAGACGAGUUGGAAUAUUGCAACAGUAAACAUAAGUUUCCAACUUGUAAUUUUAUUUUUCUUUUCCUCAUUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA135355.1	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   ||||||||||||||||||||| targets:1040   UCGUUUCUUUUCAGCCAUUUU   1060 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_19738_Transcript_1/5_Confidence_0.647.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ380384.1	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   |***||||||||||||||||| targets:60   UGCCUUCUUUUCAGCCAUUUU   80 Target Full Sequence	2.0	Vitis vinifera clone SS0ACG65YP19	NA	coding protein	psRNATarget
XM_002280963.4	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   **||||=||||=||||||||| targets:362   CAGUUUUUUUUUAGCCAUUUU   382 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable E3 ubiquitin-protein ligase LOG2 (LOC100260106), mRNA	NA	coding protein	psRNATarget
XM_010663440.2	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   *||||||*|||||||||||*| targets:1045   ACGUUUCAUUUCAGCCAUUAU   1065 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized LOC100253419 (LOC100253419), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010663441.2	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   *||||||*|||||||||||*| targets:1050   ACGUUUCAUUUCAGCCAUUAU   1070 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized LOC100253419 (LOC100253419), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010663439.2	ncRNA:21   AGCAAAGAAAAGUCGGUAAAA   1   *||||||*|||||||||||*| targets:1074   ACGUUUCAUUUCAGCCAUUAU   1094 Target Full Sequence	2.5	PREDICTED: Vitis vinifera uncharacterized LOC100253419 (LOC100253419), transcript variant X1, mRNA	NA	coding protein	psRNATarget