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BaseInfo

ncRNA ID novel_vvi_miR570
Species Vitis vinifera
Class miRNA
Genome position Chr13:9727305-9727356 [+]
Reference genome 12X
Source SRR1528357
Length 24
Mature sequence(if miRNA) 1 - AGGAAUUCAAGGAACUCGUCUCUU - 24
Stem-loop(if miRNA) --AGGA        -          U
      AUUCAAGG AACUCGUCUC U
      |||||||| |||||||||| G
      UGAGUUCC UUGAGCAGAG A
GGUAAA        C          A
Stem-loop sequence AGGAAUUCAAGGAACUCGUCUCUUGAAGAGACGAGUUCCCUUGAGUAAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019225700.1
ncRNA:24   UUCUCUGCUCAAGGAACUUAAGGA   1
  |=||**=||||||||||||||||*
targets:827   AGGAUUUGAGUUCCUUGAAUUCCA   850

3.0 PREDICTED: Vitis vinifera protein transport protein SEC16B homolog (LOC100251258), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010663016.2
ncRNA:24   UUCUCUGCUCAAGGAACUUAAGGA   1
  |=||**=||||||||||||||||*
targets:868   AGGAUUUGAGUUCCUUGAAUUCCA   891

3.0 PREDICTED: Vitis vinifera protein transport protein SEC16B homolog (LOC100251258), transcript variant X1, mRNA NA coding protein psRNATarget