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BaseInfo

ncRNA ID	novel_vvi_miR560
Species	Vitis vinifera
Class	miRNA
Genome position	Chr12:5563700-5563785 [+]
Reference genome	12X
Source	SRR1528357;SRR1528362
Length	21
Mature sequence(if miRNA)	1 - UCAUUGUCCAAUCUGGAUUAG - 21
Stem-loop(if miRNA)	--  A     C   C            CUCUC  U     AUU   UC UUGUC AAU UGGAUUAGUUUC     GC AGAUA   U   || ||||| ||| ||||||||||||     || |||||   AG AACAG UUA ACCUAAUCAAAG     CG UUUAU   C GU  G     U   A            AAUAA  U     AUC
Stem-loop sequence	UCAUUGUCCAAUCUGGAUUAGUUUCCUCUCGCUAGAUAAUUUCCUAUAUUUUGCAAUAAGAAACUAAUCCAAAUUUGACAAGGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA162011.1	ncRNA:21   GAUUAGGUCUAACCUGUUACU   1   ***|||||||||||||||||* targets:481   AGCAUCCAGAUUGGACAAUGU   501 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_5368_Transcript_3/3_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ389020.1	ncRNA:21   GAUUAGGUCUAACCUGUUACU   1   ***|||||||||||||||||* targets:481   AGCAUCCAGAUUGGACAAUGU   501 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB21YB20	NA	coding protein	psRNATarget
XM_010651810.2	ncRNA:21   GAUUAGGUCUAACCUGUUACU   1   ***|||||||||||||||||* targets:498   AGCAUCCAGAUUGGACAAUGU   518 Target Full Sequence	2.0	PREDICTED: Vitis vinifera glycolipid transfer protein 1 (LOC100259735), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002285285.4	ncRNA:21   GAUUAGGUCUAACCUGUUACU   1   ***|||||||||||||||||* targets:502   AGCAUCCAGAUUGGACAAUGU   522 Target Full Sequence	2.0	PREDICTED: Vitis vinifera glycolipid transfer protein 1 (LOC100259735), transcript variant X1, mRNA	NA	coding protein	psRNATarget
FQ388861.1	ncRNA:21   GAUUAGGUCUAACCUGUUACU   1   ***|||||||||||||||||* targets:482   AGCAUCCAGAUUGGACAAUGU   502 Target Full Sequence	2.0	Vitis vinifera clone SS0AEB21YK11	NA	coding protein	psRNATarget