ncRNA ID | novel_vvi_miR559 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr12:3521161-3521369 [-] |
Reference genome | 12X |
Source | SRR1528357 |
Length | 23 |
Mature sequence(if miRNA) | 187 - AGGACCAUUAAGGUAGUACCUGA - 209 |
Stem-loop(if miRNA) |
--AG  C                G G         C       AUG      G U           C  C     UG      CC            UU    CA     GA CAUUAAGGUAGUACCU A GUGCAUUAA GUAGUAC   AAAUUU U AUGAUUACAUA GC ACCGA  GAGUAA  UAUGAGAACAUA  ACAG  U     || |||||||||||||||| | ||||||||| |||||||   |||||| | ||||||||||| || |||||  ||||||  ||||||||||||  ||||  G     CU GUAAUUCCAUCAUGGA U CAUGUAAUU CAUCAUG   UUUAAA A UACUAAUGUAU CG UGGCU  UUCAUU  AUAUUCUUGUAU  UGUU  C AGUA  A                G A         C       GAA      G C           U  A     UA      CA            --    AC |
Stem-loop sequence | AGGACCAUUAAGGUAGUACCUGAGGUGCAUUAACGUAGUACAUGAAAUUUGUUAUGAUUACAUACGCCACCGAUGGAGUAACCUAUGAGAACAUAUUACAGCAUGCCAUUGUUAUGUUCUUAUAACUUACUUAUUCGGUAGCUUAUGUAAUCAUCAGAAAUUUAAGGUACUACCUUAAUGUACAUGAGGUACUACCUUAAUGAUCAUGA |