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BaseInfo

ncRNA ID novel_vvi_miR559
Species Vitis vinifera
Class miRNA
Genome position Chr12:3521161-3521369 [-]
Reference genome 12X
Source SRR1528357
Length 23
Mature sequence(if miRNA) 187 - AGGACCAUUAAGGUAGUACCUGA - 209
Stem-loop(if miRNA) --AG  C                G G         C       AUG      G U           C  C     UG      CC            UU    CA
    GA CAUUAAGGUAGUACCU A GUGCAUUAA GUAGUAC   AAAUUU U AUGAUUACAUA GC ACCGA  GAGUAA  UAUGAGAACAUA  ACAG  U
    || |||||||||||||||| | ||||||||| |||||||   |||||| | ||||||||||| || |||||  ||||||  ||||||||||||  ||||  G
    CU GUAAUUCCAUCAUGGA U CAUGUAAUU CAUCAUG   UUUAAA A UACUAAUGUAU CG UGGCU  UUCAUU  AUAUUCUUGUAU  UGUU  C
AGUA  A                G A         C       GAA      G C           U  A     UA      CA            --    AC
Stem-loop sequence AGGACCAUUAAGGUAGUACCUGAGGUGCAUUAACGUAGUACAUGAAAUUUGUUAUGAUUACAUACGCCACCGAUGGAGUAACCUAUGAGAACAUAUUACAGCAUGCCAUUGUUAUGUUCUUAUAACUUACUUAUUCGGUAGCUUAUGUAAUCAUCAGAAAUUUAAGGUACUACCUUAAUGUACAUGAGGUACUACCUUAAUGAUCAUGA