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BaseInfo

ncRNA ID novel_vvi_miR558
Species Vitis vinifera
Class miRNA
Genome position Chr12:4949286-4949434 [-]
Reference genome 12X
Source SRR1528357
Length 23
Mature sequence(if miRNA) 127 - AAUUCCUCAACCGGUAGGCACUG - 149
Stem-loop(if miRNA) --                  C      --CA    A  A   A        UACCAG  G              GA
  AAUUCCUCAACCGGUAGG ACUGGU    AAAA AC UCA CCGGUUGA      UU CUCAACCGGUUGAG  A
  |||||||||||||||||| ||||||    |||| || ||| ||||||||      || ||||||||||||||  A
  UUAAGGAGUUGGCCAUCU UGACCA    UUUU UG AGU GGCCAACU      AA GAGUUGGCCAACUC  U
UU                  U      AUUG    A  -   G        -CUUUA  G              GG
Stem-loop sequence AAUUCCUCAACCGGUAGGCACUGGUCAAAAAAACAUCAACCGGUUGAUACCAGUUGCUCAACCGGUUGAGGAAAUGGCUCAACCGGUUGAGGAAAUUUCUCAACCGGGUGAGUAUUUUGUUAACCAGUUUCUACCGGUUGAGGAAUUUU