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BaseInfo

ncRNA ID	novel_vvi_miR554
Species	Vitis vinifera
Class	miRNA
Genome position	Chr6:5969553-5969631 [+]
Reference genome	12X
Source	SRR1528356
Length	20
Mature sequence(if miRNA)	1 - GUGUGAAAAAUUAAUGGACU - 20
Stem-loop(if miRNA)	--                   UUA       U      UGA   GUGUGAAAAAUUAAUGGAC   AUUUUUU UUUUUU   U   |||||||||||||||||||   ||||||| ||||||   CACACUUUUUAAUUACCUG   UAAAAAA AAAAAA   A CC                   ---       C      UGA
Stem-loop sequence	GUGUGAAAAAUUAAUGGACUUAAUUUUUUUUUUUUUUGAUAAGUAAAAAACAAAAAAUGUCCAUUAAUUUUUCACACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA137617.1	ncRNA:20   UCAGGUAAUUAAAAAGUGUG   1   **||||||=||||||||||| targets:694   CAUCCAUUGAUUUUUCACAC   713 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_30024_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010657639.2	ncRNA:20   UCAGGUAAUUAAAAAGUGUG   1   **||||||=||||||||||| targets:1196   CAUCCAUUGAUUUUUCACAC   1215 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable leucine-rich repeat receptor-like protein kinase At1g35710 (LOC100247623), mRNA	NA	coding protein	psRNATarget
XM_010656199.2	ncRNA:20   UCAGGUAAUUAAAAAGUGUG   1   =|||||||*||||||||||= targets:2591   GGUCCAUUCAUUUUUCACAU   2610 Target Full Sequence	2.5	PREDICTED: Vitis vinifera protein phosphatase 2C 16 (LOC100241147), mRNA	NA	coding protein	psRNATarget
FQ381706.1	ncRNA:20   UCAGGUAAUUAAAAAGUGUG   1   |||*|||*|||||||||||| targets:592   AGUACAUGAAUUUUUCACAC   611 Target Full Sequence	2.5	Vitis vinifera clone SS0ABG87YO19	NA	coding protein	psRNATarget