Search result

BaseInfo

ncRNA ID	novel_vvi_miR543
Species	Vitis vinifera
Class	miRNA
Genome position	Chr17:2770984-2771036 [+]
Reference genome	12X
Source	SRR1048204
Length	21
Mature sequence(if miRNA)	1 - ACGUCCUUGAUCUUGAACCUG - 21
Stem-loop(if miRNA)	--     -    AUC      CUG  CC   ACGUC CUUG   UUGAAC   AG  U   ||||| ||||   ||||||   ||  C   UGCGG GAAC   AACUUG   UC  U GG     U    ---      UUA  CC
Stem-loop sequence	ACGUCCUUGAUCUUGAACCUGAGCCUCUCCCUAUUGUUCAACAAGUGGCGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019226748.1	ncRNA:21   GUCCAAGUUCUAGUUCCUGCA   1   ||||||||||||||||||||| targets:2551   CAGGUUCAAGAUCAAGGACGU   2571 Target Full Sequence	0.0	PREDICTED: Vitis vinifera uncharacterized LOC100252363 (LOC100252363), partial mRNA	NA	coding protein	psRNATarget
KA151349.1	ncRNA:21   GUCCAAGUUCUAGUUCCUGCA   1   =|||||||||||||||||||| targets:3003   UAGGUUCAAGAUCAAGGACGU   3023 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_16527_Transcript_2/10_Confidence_0.595.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA151351.1	ncRNA:21   GUCCAAGUUCUAGUUCCUGCA   1   =|||||||||||||||||||| targets:2910   UAGGUUCAAGAUCAAGGACGU   2930 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_16527_Transcript_10/10_Confidence_0.595.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA151352.1	ncRNA:21   GUCCAAGUUCUAGUUCCUGCA   1   =|||||||||||||||||||| targets:2247   UAGGUUCAAGAUCAAGGACGU   2267 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_16527_Transcript_3/10_Confidence_0.405.Vivi mRNA sequence	NA	coding protein	psRNATarget