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BaseInfo

ncRNA ID	novel_vvi_miR539
Species	Vitis vinifera
Class	miRNA
Genome position	Chr4:4049576-4049763 [-]
Reference genome	12X
Source	SRR1528356
Length	24
Mature sequence(if miRNA)	1 - GAAGGUACGAAGAAUGUGAGGAUU - 24
Stem-loop(if miRNA)	--                   C  G    --     GAGUAUUUUUGGAUUUGGAUUUUUCCGAAUAUCAUUUGACCACCUCCCAAGUGUAACAA   UCCUCACAUUCUUCGUACC UU UGAA  UUUUU                                                           A   ||||||||||||||||||| || ||||  |||||                                                           C   AGGAGUGUAAGAAGCAUGG AA GCUU  GAGGU                                                           C UU                   -  G    AA     GAAGAAACCUCAAAAAUUUUAAAAAACCCUGUAGUAUACUGAACCUACAAAAAAUUUAU
Stem-loop sequence	UCCUCACAUUCUUCGUACCCUUGUGAAUUUUUGAGUAUUUUUGGAUUUGGAUUUUUCCGAAUAUCAUUUGACCACCUCCCAAGUGUAACAAACCUAUUUAAAAAACAUCCAAGUCAUAUGAUGUCCCAAAAAAUUUUAAAAACUCCAAAGAAGUGGAGAAUUCGGAAGGUACGAAGAAUGUGAGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FQ395742.1	ncRNA:24   UUAGGAGUGUAAGAAGCAUGGAAG   1   |*||=|||||||||||||||||*= targets:1209   AUUCUUCACAUUCUUCGUACCUAU   1232 Target Full Sequence	2.5	Vitis vinifera clone SS0AFA14YF07	NA	coding protein	psRNATarget