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BaseInfo

ncRNA ID novel_vvi_miR535
Species Vitis vinifera
Class miRNA
Genome position Chr4:20015619-20015676 [+]
Reference genome 12X
Source SRR1528356
Length 22
Mature sequence(if miRNA) 37 - AUCUCCGGCGAGCUCAUGGUGC - 58
Stem-loop(if miRNA) --   U  - UC      U   C   G A
  ACC UG G  CGUCGG GAU GGA G G
  ||| || |  |||||| ||| ||| | U
  UGG AC C  GCGGCC CUA CUU C A
CG   U  U GA      U   A   G A
Stem-loop sequence ACCUUGGUCCGUCGGUGAUCGGAGGAGUAACGUUCAAUCUCCGGCGAGCUCAUGGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA160059.1
ncRNA:22   CGUGGUACUCGAGCGGCCUCUA   1
  ||||||||||||||||||||||
targets:910   GCACCAUGAGCUCGCCGGAGAU   931

0.0 TSA: Vitis vinifera Locus_11373_Transcript_4/5_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget