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BaseInfo

ncRNA ID novel_vvi_miR530
Species Vitis vinifera
Class miRNA
Genome position Chr3:16781364-16781421 [-]
Reference genome 12X
Source SRR1528356
Length 21
Mature sequence(if miRNA) 38 - AACAAAUAUCUGUAGAGGUUU - 58
Stem-loop(if miRNA) --A   A  A              GUUUU
   ACA AU UCUGUAGAGGUUUU     G
   ||| || ||||||||||||||     A
   UGU UA AGACAUCUUUAAAG     A
CUA   C  -              AGUGU
Stem-loop sequence AACAAAUAUCUGUAGAGGUUUUGUUUUGAAUGUGAGAAAUUUCUACAGAAUCUGUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA136418.1
ncRNA:21   UUUGGAGAUGUCUAUAAACAA   1
  |||||*=|||||||||||||*
targets:1480   AAACCAUUACAGAUAUUUGUG   1500

3.0 TSA: Vitis vinifera Locus_15657_Transcript_7/10_Confidence_0.233.Vivi mRNA sequence NA coding protein psRNATarget
KA136417.1
ncRNA:21   UUUGGAGAUGUCUAUAAACAA   1
  |||||*=|||||||||||||*
targets:1736   AAACCAUUACAGAUAUUUGUG   1756

3.0 TSA: Vitis vinifera Locus_15657_Transcript_9/10_Confidence_0.433.Vivi mRNA sequence NA coding protein psRNATarget