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BaseInfo

ncRNA ID novel_vvi_miR529
Species Vitis vinifera
Class miRNA
Genome position Chr11:4317237-4317319 [+]
Reference genome 12X
Source SRR1528356;SRR1528357;SRR1528358;SRR1528360;SRR1528361;SRR1528363;SRR1528370;SRR1528372;SRR1528380;SRR1528405;SRR1528407
Length 19
Mature sequence(if miRNA) 65 - UUGGACUGAAGGGAGCUCC - 83
Stem-loop(if miRNA) --         G   C         CUCCAUC  -     AAGA
  GGUUCCUUU CAG CCAAAACAA       GC UGAAG    U
  ||||||||| ||| |||||||||       || |||||    G
  UCGAGGGAA GUC GGUUUUGUU       CG ACUUC    A
CC         -   A         ----CCU  U     AAGU
Stem-loop sequence GGUUCCUUUGCAGCCCAAAACAACUCCAUCGCUGAAGAAGAUGAUGAACUUCAUGCUCCUUGUUUUGGACUGAAGGGAGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139082.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||||||||
targets:772   GGAGCUCCCUUCAGUCCAA   790

0.0 TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence NA coding protein psRNATarget
KA139083.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||||||||
targets:2082   GGAGCUCCCUUCAGUCCAA   2100

0.0 TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence NA coding protein psRNATarget
KA139084.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||||||||
targets:2929   GGAGCUCCCUUCAGUCCAA   2947

0.0 TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence NA coding protein psRNATarget
KX639825.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:958   GGAGCUCCCUUCACUCCAA   976

1.5 UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence NA coding protein psRNATarget
XM_019217706.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1077   GGAGCUCCCUUCACUCCAA   1095

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA NA coding protein psRNATarget
XM_019217705.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1431   GGAGCUCCCUUCACUCCAA   1449

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA NA coding protein psRNATarget
XM_019217704.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1438   GGAGCUCCCUUCACUCCAA   1456

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA NA coding protein psRNATarget
KA143670.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1424   GGAGCUCCCUUCACUCCAA   1442

1.5 TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence NA coding protein psRNATarget
XM_010647229.2
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1483   GGAGCUCCCUUCACUCCAA   1501

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010647226.2
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1490   GGAGCUCCCUUCACUCCAA   1508

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA NA coding protein psRNATarget
XM_002275810.4
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1750   GGAGCUCCCUUCACUCCAA   1768

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010647228.2
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  |||||||||||||*|||||
targets:1819   GGAGCUCCCUUCACUCCAA   1837

1.5 PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA NA coding protein psRNATarget
KA137470.1
ncRNA:19   CCUCGAGGGAAGUCAGGUU   1
  ||=|**|||||||||||||
targets:960   GGGGGACCCUUCAGUCCAA   978

3.0 TSA: Vitis vinifera Locus_9939_Transcript_6/7_Confidence_0.222.Vivi mRNA sequence NA coding protein psRNATarget
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