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BaseInfo

ncRNA ID novel_vvi_miR525
Species Vitis vinifera
Class miRNA
Genome position Chr3:12452975-12453162 [+]
Reference genome 12X
Source SRR1528356
Length 24
Mature sequence(if miRNA) 165 - GAGGGUACGAAGAUUGUGAGGAUU - 188
Stem-loop(if miRNA) --        C               ------UA         -UA        UUUAU      UC   A     UUUA  ACCUCCUAAG   AACGAA
  UCCUCACA UCUUCGUACCCUUAU        ACUUUUUUG   UUUUUGAA     AUUUUU  GGA AUCAU    GC          UGU      C
  |||||||| |||||||||||||||        |||||||||   ||||||||     ||||||  ||| |||||    ||          |||      C
  AGGAGUGU AGAAGCAUGGGAGUG        UGAAGAAAC   AAAAAUUU     UAAAAA  CCU UAGUA    CG          ACA      U
UU        U               UUAAGAGG         CUC        ----U      -C   G     -UAC  --AACCUACA   AAUUUA
Stem-loop sequence UCCUCACACUCUUCGUACCCUUAUUAACUUUUUUGUAUUUUUGAAUUUAUAUUUUUUCGGAAAUCAUUUUAGCACCUCCUAAGUGUAACGAACCUAUUUAAACAACAUCCAAGCCAUAUGAUGUCCCAAAAAUUUUUAAAAACUCCAAAGAAGUGGAGAAUUGUGAGGGUACGAAGAUUGUGAGGAUU