Search result

BaseInfo

ncRNA ID	novel_vvi_miR524
Species	Vitis vinifera
Class	miRNA
Genome position	Chr3:10227236-10227292 [+]
Reference genome	12X
Source	SRR1528356;SRR1528358
Length	21
Mature sequence(if miRNA)	1 - UAAGUGUGAUUAAUAGAGGCC - 21
Stem-loop(if miRNA)	--    U   A   A   A    -A   AC   UAAG GUG UUA UAG GGCC  CCU  A   |||| ||| ||| ||| ||||  |||   AUUC CAC GGU GUC CUGG  GGA  A UC    -   -   A   A    AA   AC
Stem-loop sequence	UAAGUGUGAUUAAUAGAGGCCACCUACAACAAGGAAGGUCACUGAUGGCACCUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA158079.1	ncRNA:21   CCGGAGAUAAUUAGUGUGAAU   1   ||||||||||||||||||||| targets:282   GGCCUCUAUUAAUCACACUUA   302 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_19814_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA157693.1	ncRNA:21   CCGGAGAUAAUUAGUGUGAAU   1   |||||||=||||||||||*|| targets:102   GGCCUCUGUUAAUCACACCUA   122 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_22446_Transcript_2/7_Confidence_0.440.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA158078.1	ncRNA:21   CCGGAGAUAAUUAGUGUGAAU   1   |||||||=||||||||||*|| targets:102   GGCCUCUGUUAAUCACACCUA   122 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_22446_Transcript_3/7_Confidence_0.520.Vivi mRNA sequence	NA	coding protein	psRNATarget