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BaseInfo

ncRNA ID	novel_vvi_miR518
Species	Vitis vinifera
Class	miRNA
Genome position	Chr16:14450285-14450346 [+]
Reference genome	12X
Source	SRR1048204
Length	24
Mature sequence(if miRNA)	39 - GGACAAUAUCUACAUGAUUGAGAG - 62
Stem-loop(if miRNA)	--     C                A     A   UUCAA CGUGUGGAUAUUGUCC CUUUG G   ||||| |||||||||||||||| |||||   GAGUU GUACAUCUAUAACAGG GAAAC G GA     A                G     C
Stem-loop sequence	UUCAACCGUGUGGAUAUUGUCCACUUUGAGGCCAAAGGGGACAAUAUCUACAUGAUUGAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA170293.1	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   |*=|=||||=|||||||||||||| targets:1123   CAUUUAAUCGUGUAGAUAUUGUCC   1146 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_27479_Transcript_3/3_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002273575.3	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   |||*|||*|||||||||||||||| targets:1916   CUCCCAACCAUGUAGAUAUUGUCC   1939 Target Full Sequence	1.0	PREDICTED: Vitis vinifera DUF21 domain-containing protein At5g52790 (LOC100256110), mRNA	NA	coding protein	psRNATarget
KA146335.1	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   *||-||||||||||||*||||||| targets:788   AUC-CAAUCAUGUAGACAUUGUCC   810 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_63652_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA140367.1	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   |*|*|||||=|||||||||||||= targets:1814   CACCCAAUCGUGUAGAUAUUGUCU   1837 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_2482_Transcript_7/10_Confidence_0.385.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA152016.1	ncRNA:24   GAGAG--UUAGUACAUCUAUAACAGG   1   |||||--||||||||||||||||||| targets:946   CUCUCCUAAUCAUGUAGAUAUUGUCC   971 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_501_Transcript_7/10_Confidence_0.553.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA152015.1	ncRNA:24   GAGAG--UUAGUACAUCUAUAACAGG   1   |||||--||||||||||||||||||| targets:946   CUCUCCUAAUCAUGUAGAUAUUGUCC   971 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_501_Transcript_3/10_Confidence_0.553.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA173302.1	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   ||||-|||||||||*||||||||* targets:915   CUCU-AAUCAUGUAAAUAUUGUCG   937 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_8473_Transcript_2/3_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146335.1	ncRNA:24   GAGA---GUUAGUACAUCUAUAACAGG   1   ||*|---=|||||||||||||||||== targets:524   CUAUACCUAAUCAUGUAGAUAUUGUUU   550 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_63652_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010658114.2	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   |||*|||*|||||||||||||*|| targets:667   CUCGCAAACAUGUAGAUAUUGCCC   690 Target Full Sequence	2.5	PREDICTED: Vitis vinifera protein sel-1 homolog 1 (LOC100250962), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KA174592.1	ncRNA:24   GAGAGUUAGUACAUCUAUAACAGG   1   *|||-||*||||||||||||||=| targets:112   AUCU-AACCAUGUAGAUAUUGUUC   134 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_34203_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget