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BaseInfo

ncRNA ID novel_vvi_miR511
Species Vitis vinifera
Class miRNA
Genome position Chr19:19961229-19961312 [-]
Reference genome 12X
Source SRR1528356
Length 21
Mature sequence(if miRNA) 64 - UCUGAAAAGUGUUUCUAGUCU - 84
Stem-loop(if miRNA) --UC   A                  A             UU
    UGA AAGUGUUUCUAGUCUUUU UAAUACUUGAAAA  U
    ||| |||||||||||||||||| |||||||||||||  U
    ACU UUCAUAAAGAUCAGAAAG AUUAUGAACUUUU  U
UAAU   C                  -             UA
Stem-loop sequence UCUGAAAAGUGUUUCUAGUCUUUUAUAAUACUUGAAAAUUUUUAUUUUUCAAGUAUUAGAAAGACUAGAAAUACUUCUCAUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA152277.1
ncRNA:21   UCUGAUCUUUGUGAAAAGUCU   1
  |*||||||||||||||||*||
targets:2608   AAACUAGAAACACUUUUCCGA   2628

1.5 TSA: Vitis vinifera Locus_5026_Transcript_4/5_Confidence_0.538.Vivi mRNA sequence NA coding protein psRNATarget