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BaseInfo

ncRNA ID	novel_vvi_miR504
Species	Vitis vinifera
Class	miRNA
Genome position	Chr11:16439725-16439799 [+]
Reference genome	12X
Source	SRR1528356;SRR1528358;SRR1048204;SRR2029784
Length	22
Mature sequence(if miRNA)	1 - CAGCCAAGGAUGACUUGCCGGC - 22
Stem-loop(if miRNA)	--C     A   UG         CACUUG  AUUAGGCAC    AGCCA GGA  ACUUGCCGG      GC         C    ||||| |||  |||||||||      ||         A    UCGGU CUU  UGAACGGCC      CU         U ACA     C   GU         ------  UCUACUAGC
Stem-loop sequence	CAGCCAAGGAUGACUUGCCGGCACUUGGCAUUAGGCACCAUCGAUCAUCUUCCCGGCAAGUUGUUCCUGGCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146519.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   |||||||||||||||||||||| targets:4   GCCGGCAAGUCAUCCUUGGCUG   25 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656179.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:2188   CUUGGAAAGUCAUCCUUGGCUG   2209 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010656177.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:1522   CUUGGAAAGUCAUCCUUGGCUG   1543 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KA170940.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:1515   CUUGGAAAGUCAUCCUUGGCUG   1536 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_3/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002274422.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:1406   CUUGGAAAGUCAUCCUUGGCUG   1427 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA170942.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:1028   CUUGGAAAGUCAUCCUUGGCUG   1049 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_2/3_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656180.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:971   CUUGGAAAGUCAUCCUUGGCUG   992 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X4, mRNA	NA	coding protein	psRNATarget
KA170941.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:973   CUUGGAAAGUCAUCCUUGGCUG   994 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656181.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   *==||*|||||||||||||||| targets:803   CUUGGAAAGUCAUCCUUGGCUG   824 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_002263757.3	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   **=||=||*||||||||||||* targets:1457   AAUGGUAAUUCAUCCUUGGCUC   1478 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010654961.2	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   **=||=||*||||||||||||* targets:1393   AAUGGUAAUUCAUCCUUGGCUC   1414 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019221448.1	ncRNA:22   CGGCCGUUCAGUAGGAACCGAC   1   **=||=||*||||||||||||* targets:1374   AAUGGUAAUUCAUCCUUGGCUC   1395 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA	NA	coding protein	psRNATarget