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BaseInfo

ncRNA ID	novel_vvi_miR500
Species	Vitis vinifera
Class	miRNA
Genome position	Chr11:16347823-16347900 [+]
Reference genome	12X
Source	SRR1528356;SRR1528357
Length	21
Mature sequence(if miRNA)	1 - AGCCAAGGAUGACUUGCCGGC - 21
Stem-loop(if miRNA)	--    AA     A        --CA  UGCAGCAAGGCA   AGCC  GGAUG CUUGCCGG    GC            U   ||||  ||||| ||||||||    ||            U   UCGG  CCUAC GAACGGUC    UC            A UC    AG     -        AAUA  GGUCAAUUUGGA
Stem-loop sequence	AGCCAAGGAUGACUUGCCGGCAGCUGCAGCAAGGCAUUAAGGUUUAACUGGCUAUAACUGGCAAGCAUCCGAGGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146519.1	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   ||||||||||||||||||||| targets:4   GCCGGCAAGUCAUCCUUGGCU   24 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656179.2	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:2188   CUUGGAAAGUCAUCCUUGGCU   2208 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010656177.2	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:1522   CUUGGAAAGUCAUCCUUGGCU   1542 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KA170940.1	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:1515   CUUGGAAAGUCAUCCUUGGCU   1535 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_10060_Transcript_3/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002274422.3	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:1406   CUUGGAAAGUCAUCCUUGGCU   1426 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA170942.1	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:1028   CUUGGAAAGUCAUCCUUGGCU   1048 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_10060_Transcript_2/3_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656180.2	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:971   CUUGGAAAGUCAUCCUUGGCU   991 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X4, mRNA	NA	coding protein	psRNATarget
KA170941.1	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:973   CUUGGAAAGUCAUCCUUGGCU   993 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_10060_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656181.2	ncRNA:21   CGGCCGUUCAGUAGGAACCGA   1   *==||*||||||||||||||| targets:803   CUUGGAAAGUCAUCCUUGGCU   823 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X5, mRNA	NA	coding protein	psRNATarget