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BaseInfo

ncRNA ID	novel_vvi_miR498
Species	Vitis vinifera
Class	miRNA
Genome position	Chr18:4263910-4264006 [+]
Reference genome	12X
Source	SRR1528356
Length	22
Mature sequence(if miRNA)	1 - GAGUGAUUUUAGAAAACGUUUC - 22
Stem-loop(if miRNA)	--G          GA   CG   C              C   UAU   A    AGUGAUUUUA  AAA  UUU UAGUAUUUUUAAUA UUG   AAU A    ||||||||||  |||  ||| |||||||||||||| |||   ||| A    UCACUAAAAU  UUU  GAA AUUAUAAAAAUUAU AAU   UUA A CUA          UC   AU   A              A   --U   A
Stem-loop sequence	GAGUGAUUUUAGAAAACGUUUCUAGUAUUUUUAAUACUUGUAUAAUAAAAAAUUUUAAAUAUUAAAAAUAUUAAAAGUAUUUCUUAAAAUCACUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA140661.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||=||||||||||||||||= targets:89   UAAAUGUUUUCUAAAAUCACUU   110 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_16645_Transcript_2/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA168752.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||=||||||||||||||||* targets:1234   AAAAUGUUUUCUAAAAUCACUA   1255 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139131.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||=||||||||||||||||* targets:2470   AAAAUGUUUUCUAAAAUCACUG   2491 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_5005_Transcript_7/10_Confidence_0.523.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139131.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   |||||*|||||||||||||||* targets:2364   GAAACAUUUUCUAAAAUCACUA   2385 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_5005_Transcript_7/10_Confidence_0.523.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002283486.3	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *||||||*|||||=|||||||| targets:2088   UAAACGUAUUCUAGAAUCACUC   2109 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable polyamine transporter At3g13620 (LOC100263949), mRNA	NA	coding protein	psRNATarget
KA164772.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *||||||*|||||=|||||||| targets:2275   UAAACGUAUUCUAGAAUCACUC   2296 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_15706_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA164772.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *||||||*|||||=|||||||| targets:2397   UAAACGUAUUCUAGAAUCACUC   2418 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_15706_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138708.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||*||||||||=|||||||| targets:2611   AAAAAGUUUUCUAGAAUCACUC   2632 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_12129_Transcript_2/5_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138707.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||*||||||||=|||||||| targets:2651   AAAAAGUUUUCUAGAAUCACUC   2672 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_12129_Transcript_1/5_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA155688.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *|||||*||||||=|||||||| targets:1543   AAAACGCUUUCUAGAAUCACUC   1564 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13686_Transcript_2/6_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA135132.1	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   ||||||*|||*||||||||||| targets:1329   GAAACGCUUUAUAAAAUCACUC   1350 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13541_Transcript_5/6_Confidence_0.722.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002264582.3	ncRNA:22   CUUUGCAAAAGAUUUUAGUGAG   1   *||||**||||||||||||||= targets:2406   AAAACACUUUCUAAAAUCACUU   2427 Target Full Sequence	3.0	PREDICTED: Vitis vinifera mechanosensitive ion channel protein 10 (LOC100260421), mRNA	NA	coding protein	psRNATarget