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BaseInfo

ncRNA ID	novel_vvi_miR493
Species	Vitis vinifera
Class	miRNA
Genome position	Chr18:10977109-10977161 [+]
Reference genome	12X
Source	SRR1528356
Length	21
Mature sequence(if miRNA)	1 - UUUGACUGAAUAGAAAAAACC - 21
Stem-loop(if miRNA)	--    AC                 A   UUUG  UGAAUAGAAAAAACCAA A   ||||  ||||||||||||||||| U   AAAU  ACUUAUCUUUUUUGGUU A GA    CA                 U
Stem-loop sequence	UUUGACUGAAUAGAAAAAACCAAAAUAUUUGGUUUUUUCUAUUCAACUAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA159067.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   ||||||||||||||||||||| targets:1464   GGUUUUUUCUAUUCAGUCAAA   1484 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   |*|||||||||||||||=||| targets:1323   GAUUUUUUCUAUUCAGUUAAA   1343 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA169318.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   **|||||||||||||*||||| targets:28   UUUUUUUUCUAUUCAAUCAAA   48 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1027_Transcript_1/5_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019221171.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   **||||||||||*|||||||| targets:2812   CUUUUUUUCUAUCCAGUCAAA   2832 Target Full Sequence	1.5	PREDICTED: Vitis vinifera ent-copalyl diphosphate synthase, chloroplastic (LOC100259570), mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   ***||||||||||||||=||| targets:1879   UACUUUUUCUAUUCAGUUAAA   1899 Target Full Sequence	2.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
KA167153.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   ||*|||||||||||||*|||| targets:3592   GGCUUUUUCUAUUCAGCCAAA   3612 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167155.1	ncRNA:21   CCAAAAAAGAUAAGUCAGUUU   1   ||*|||||||||||||*|||| targets:3810   GGCUUUUUCUAUUCAGCCAAA   3830 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget