Search result

BaseInfo

ncRNA ID	novel_vvi_miR487
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:5982492-5982540 [+]
Reference genome	12X
Source	SRR1528356;SRR1528380;SRR1528387
Length	24
Mature sequence(if miRNA)	1 - UAGGUGAAGAUAGAGAAUUUGAAU - 24
Stem-loop(if miRNA)	--   G     AUA         A   UAG UGAAG   GAGAAUUUG A   ||| |||||   ||||||||| U   GUU AUUUU   CUCUUAAAC U UU   G     AAG         U
Stem-loop sequence	UAGGUGAAGAUAGAGAAUUUGAAUUUCAAAUUCUCGAAUUUUAGUUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146935.1	ncRNA:24   UAAGUUUAAGAGAUAGAAGUGGAU   1   ||||*||||||||||||||||=|= targets:4755   AUUCUAAUUCUCUAUCUUCACUUG   4778 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_10436_Transcript_8/11_Confidence_0.552.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146933.1	ncRNA:24   UAAGUUUAAGAGAUAGAAGUGGAU   1   ||||*||||||||||||||||=|= targets:4857   AUUCUAAUUCUCUAUCUUCACUUG   4880 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_10436_Transcript_6/11_Confidence_0.586.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA146934.1	ncRNA:24   UAAGUUUAAGAGAUAGAAGUGGAU   1   ||||*||||||||||||||||=|= targets:4997   AUUCUAAUUCUCUAUCUUCACUUG   5020 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_10436_Transcript_7/11_Confidence_0.534.Vivi mRNA sequence	NA	coding protein	psRNATarget