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BaseInfo

ncRNA ID	novel_vvi_miR483
Species	Vitis vinifera
Class	miRNA
Genome position	Chr14:6240442-6240562 [-]
Reference genome	12X
Source	SRR1048204
Length	24
Mature sequence(if miRNA)	98 - GAGUGUGUUUGAUAGUGAUUCUAG - 121
Stem-loop(if miRNA)	--                    CU              AUA     --AACAC            GAGUGUGUUUGAUAGUGAUU  AGAAAGUGUUUCUA   UCUUU       UUAAAAAAUA   ||||||||||||||||||||  ||||||||||||||   |||||       |||||||||A   UUCACGUAAACUAUCACUAA  UCUUUCAUAAAGAU   AGAAA       AAUUUUUUAA UU                    AU              --A     AAUUAUC
Stem-loop sequence	GAGUGUGUUUGAUAGUGAUUCUAGAAAGUGUUUCUAAUAUCUUUAACACUUAAAAAAUAAAAUUUUUUAACUAUUAAAAAGAAUAGAAAUACUUUCUUAAAUCACUAUCAAAUGCACUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146990.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||*|||||||||||||||||||| targets:3475   CUAAAAUCACUAUCAAACACACUC   3498 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_5272_Transcript_7/11_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA134361.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   =|=*|||=|||||||||||||||| targets:140   UUGAAAUUACUAUCAAACACACUC   163 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_23803_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165410.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   =||-|||||||||||||||||||= targets:76   UUA-AAUCACUAUCAAACACACUU   98 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_18857_Transcript_3/9_Confidence_0.188.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165411.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   =||-|||||||||||||||||||= targets:76   UUA-AAUCACUAUCAAACACACUU   98 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_18857_Transcript_7/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170970.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||||||||||||||||=|||||| targets:246   CUAGAAUCACUAUCAAAUACACUC   269 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_17927_Transcript_6/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170969.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||||||||||||||||=|||||| targets:246   CUAGAAUCACUAUCAAAUACACUC   269 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_17927_Transcript_3/6_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019216909.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||||||||||||||||||*|||| targets:837   CUAGAAUCACUAUCAAACAAACUC   860 Target Full Sequence	1.5	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002267790.3	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||||||||||||||||||*|||| targets:865   CUAGAAUCACUAUCAAACAAACUC   888 Target Full Sequence	1.5	PREDICTED: Vitis vinifera peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic (LOC100261657), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA168752.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||*|||||||||||||||=|||| targets:1244   CUAAAAUCACUAUCAAACAUACUC   1267 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_612_Transcript_1/10_Confidence_0.462.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166591.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   |||*|||||||=|||||||||||| targets:893   CUAAAAUCACUGUCAAACACACUC   916 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1103_Transcript_2/9_Confidence_0.406.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA171163.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   *||*|||||||=|||||||||||| targets:1000   GUAAAAUCACUGUCAAACACACUC   1023 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_6292_Transcript_2/4_Confidence_0.636.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA152277.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   =**||||||||=|||||||||||| targets:2624   UCCGAAUCACUGUCAAACACACUC   2647 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_5026_Transcript_4/5_Confidence_0.538.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165160.1	ncRNA:24   GAUCUUAGUGAUAGUUUGUGUGAG   1   =||||||=|||=|||||||||||| targets:1221   UUAGAAUUACUGUCAAACACACUC   1244 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_8081_Transcript_3/5_Confidence_0.286.Vivi mRNA sequence	NA	coding protein	psRNATarget