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BaseInfo

ncRNA ID lus-miR393d
Species Linum usitatissimum
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UCCAAAGGGAUCGCAUUGAUC - NA
Stem-loop(if miRNA)    CU   --------      -  UC UC      GA     ------------------    --UUU        C             U       UCAUGAU  U   AUAUAUAUCUAUAUA
CUU  CCA        UCUGUU CU  G  AGCUUU  UUAGU                  GCAG     GAGAGUUC AAAGGGAUCGCAU GAUCUAA       GA GAU               U
|||  |||        |||||| ||  |  ||||||  |||||                  ||||     |||||||| ||||||||||||| |||||||       || |||
GAA  GGU        AGACGA GA  C  UCGAAG  AAUCG                  CGUC     CUCUUAAG UUUCCCUAGCGUA CUAGAUU       GU UAA               C
   AU   CAUAUAUU      C  -U GA      --     ACCCAUACAUCAAAUCUC    UCUAC        C             -       -------  -   UUGAUUGACCACCUU
Stem-loop sequence CUUCUCCAUCUGUUCUUCGUCAGCUUUGAUUAGUGCAGUUUGAGAGUUCCAAAGGGAUCGCAUUGAUCUAAUCAUGAUGAUGAUAUAUAUAUCUAUAUAUCUUCCACCAGUUAGUUAAUUGUUAGAUCAUGCGAUCCCUUUCGAAUUCUCCAUCUCUGCCUCUAAACUACAUACCCAGCUAAGAAGCUAGCUAGCAGCAGAUUAUAUACUGGUAAAG

Reference

1 PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes";
Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY;
Planta. 237:1149-1161(2013).