Search result

BaseInfo

ncRNA ID	novel_vvi_miR464
Species	Vitis vinifera
Class	miRNA
Genome position	Chr15:12610073-12610305 [+]
Reference genome	12X
Source	SRR1528356;SRR1528364;SRR1528386;SRR1528387
Length	24
Mature sequence(if miRNA)	1 - GAGGAUACGAAGAAUGUGAGGAUU - 24
Stem-loop(if miRNA)	--GA  A                 U                  -   G    A      AAUA            ----GUU     U   -----A   AU    CCACCUC       UAA     GG UACGAAGAAUGUGAGGA UCCUCACAUUCUUUGUAC CUU UCUA UUUUUU    UUUUUGGAUUUU       UUUUG GGA      AUG  UUGA       UUAAGUA   U     || ||||||||||||||||| |||||||||||||||||| ||| |||| ||||||    ||||||||||||       ||||| |||      |||  ||||       |||||||   G     CC AUGUUUCUUACACUCCU AGGAGUGUAAGAAGCAUG GAA GGGU AGAGGG    AGAAACUUGAAA       AAAAC CCU      UAC  AACU       AAUUUAU   A GUUA  -                 U                  A   -    A      --GA            AUUUUUU     C   GAAGUA   CG    UAUAACA       CCA
Stem-loop sequence	GAGGAUACGAAGAAUGUGAGGAUUCCUCACAUUCUUUGUACCUUGUCUAAUUUUUUAAUAUUUUUGGAUUUUGUUUUUUGUGGAAAUGAUUUGACCACCUCUUAAGUAUAAUGAACCUAUUUAAACAAUAUUCAAGCCAUAUGAAGUCCCCAAAAUUUUUUAAAAGUUCAAAGAAGGGGAGAAUGGGAAGAGUACGAAGAAUGUGAGGAUUCCUCACAUUCUUUGUACCAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FQ395742.1	ncRNA:24   UUAGGAGUGUAAGAAGCAUAGGAG   1   |*||||*||||||||||||||||= targets:1022   AUUCCUAACAUUCUUCGUAUCCUU   1045 Target Full Sequence	2.0	Vitis vinifera clone SS0AFA14YF07	NA	coding protein	psRNATarget