Search result

BaseInfo

ncRNA ID	novel_vvi_miR460
Species	Vitis vinifera
Class	miRNA
Genome position	Chr14:25491210-25491282 [-]
Reference genome	12X
Source	SRR1528356;SRR1528358;SRR1528374;SRR1528380;SRR1528381;SRR1528383;SRR2029784
Length	21
Mature sequence(if miRNA)	1 - UGAUUGAGCCGUGCCAAUAUC - 21
Stem-loop(if miRNA)	--      G            AACC    AU    A   UGUUGG ACGGCUCAAUCA    AAAG  CUCA U   |||||| ||||||||||||    ||||  |||| G   AUAACC UGCCGAGUUAGU    UUUC  GAGU G CU      G            CUAA    CU    U
Stem-loop sequence	UGUUGGGACGGCUCAAUCAAACCAAAGAUCUCAAUGGUUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
FQ387249.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:128   GAUAUUGGCGCGGCUCAAUCA   148 Target Full Sequence	1.5	Vitis vinifera clone SS0AEB27YD06	NA	coding protein	psRNATarget
FQ396308.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:726   GAUAUUGGCGCGGCUCAAUCA   746 Target Full Sequence	1.5	Vitis vinifera clone SS0AFA10YI14	NA	coding protein	psRNATarget
XM_002268409.4	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:741   GAUAUUGGCGCGGCUCAAUCA   761 Target Full Sequence	1.5	PREDICTED: Vitis vinifera scarecrow-like protein 15 (LOC100251313), mRNA	NA	coding protein	psRNATarget
KA156503.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1592   GAUAUUGGCGCGGCUCAAUCA   1612 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_4453_Transcript_3/8_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010664124.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1667   GAUAUUGGCGCGGCUCAAUCA   1687 Target Full Sequence	1.5	PREDICTED: Vitis vinifera scarecrow-like protein 22 (LOC100252271), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010663377.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1598   GAUAUUGGCGCGGCUCAAUCA   1618 Target Full Sequence	1.5	PREDICTED: Vitis vinifera scarecrow-like protein 27 (LOC100267664), mRNA	NA	coding protein	psRNATarget
KA147554.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1620   GAUAUUGGCGCGGCUCAAUCA   1640 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_15685_Transcript_1/2_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010664120.2	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1855   GAUAUUGGCGCGGCUCAAUCA   1875 Target Full Sequence	1.5	PREDICTED: Vitis vinifera scarecrow-like protein 22 (LOC100252271), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JA894826.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||=||||*|||||||||||| targets:14   GAUGUUGGGACGGCUCAAUCA   34 Target Full Sequence	2.5	Sequence 143 from Patent WO2011067745	NA	coding protein	psRNATarget
KA139855.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||*|=||||||||||| targets:127   GAUAUUGACGCGGCUCAAUCA   147 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_55207_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget