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BaseInfo

ncRNA ID novel_vvi_miR455
Species Vitis vinifera
Class miRNA
Genome position Chr1:4727294-4727352 [-]
Reference genome 12X
Source SRR1048204;SRR1528370;SRR1528371;SRR1528381;SRR1528406;SRR1049295
Length 24
Mature sequence(if miRNA) 1 - GUUUAGUUUAAUGAUGUUGGUUGA - 24
Stem-loop(if miRNA) --         A      G         U
  AACCAACAU AUUAAA UGAACUUAU A
  ||||||||| |||||| ||||||||| U
  UUGGUUGUA UAAUUU AUUUGAAUA C
AG         G      G         A
Stem-loop sequence AACCAACAUAAUUAAAGUGAACUUAUUAUCAAUAAGUUUAGUUUAAUGAUGUUGGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA138950.1
ncRNA:24   AGUUGGUUGUAGUAAUUUGAUUUG   1
  ||*|=||||||*|||||||||||=
targets:1074   UCCAUCAACAUAAUUAAACUAAAU   1097

2.5 TSA: Vitis vinifera Locus_4335_Transcript_8/10_Confidence_0.412.Vivi mRNA sequence NA coding protein psRNATarget